ATCC® 29800™ | Alistipes putredinis | ATCC Genome Portal

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Organism Summary
Catalog Number	ATCC® 29800™
Strain Alias	VPI 3293 [1Ando, CCUG 45780, CIP 104286, DSM 17216]
Isolation	Feces
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	November 30, 2020
Length	2,547,415 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	2,547,415 nt
%GC	53.27%

Annotations Summary
Number of CDS	2280
Number of Hypothetical Proteins	503
Number of tRNA	50
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	405,254
Oxford Nanopore Median Q Score	25
Illumina Read Count	17,631,326
Illumina Mean Coverage Depth	939.72×
Illumina Median Q Score	34

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	17,631,326
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control

Assembly Quality Control Metrics
Estimated genome completeness	98.76%
Estimated genome contamination	0.3%
Illumina depth of coverage	939.72×