ATCC® BAA-2551™ | Saccharopolyspora indica

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 31, 2023
Length	8,754,514 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	11 (0 Circularized)
N50	4,586,224 nt
%GC	70.91%

Organism Summary
Name	ATCC® BAA-2551™
Strain Name	VRC122
Isolation	Rhizosphere soil of Callistemon sp.
Tags	Methylation Data
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	8071
Number of Hypothetical Proteins	1188
Number of tRNA	58
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	338,239
Oxford Nanopore Median Q Score	25
Illumina Read Count	13,826,420
Illumina Mean Coverage Depth	231.893×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads13,826,420

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.94%

PassedEstimated genome contamination3.04%

PassedAverage depth of coverage231.893×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Saccharopolyspora indica (ATCC® BAA-2551™)