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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 2, 2021 |
| Length | 4,663,031 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Level | None |
| N50 | 4,631,769 nt |
| %GC | 50.75% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-525™ |
| Genotype | F- dam-13::Tn9 dcm-6 hsdM hsdR zjj-202::Tn10 recF143 galK2 galT22 ara-14 lacY1 xyl-5 leuB6 thi-1 tonA31 rpsL136 hisG4 tsx-78 mtl-1 gln |
| Isolation | Derived from existing strain, constructed from strain GM2929 by T. MacNeil |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,438 |
| Number of Hypothetical Proteins | 93 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 177,557 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 12,294,316 |
| Illumina Mean Coverage Depth | 370.324× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads12,294,316
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.97%
PassedEstimated genome contamination0.04%
PassedAverage depth of coverage370.324×
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