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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 1, 2022 |
| Length | 3,126,133 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (0 Circularized) |
| Assembly Level | Chromosome |
| N50 | 829,155 nt |
| %GC | 68.02% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-78™ |
| Isolation | Wheatgrass (Agropyron smithii) |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,935 |
| Number of Hypothetical Proteins | 536 |
| Number of tRNA | 49 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 43,313 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 21,693,641 |
| Illumina Mean Coverage Depth | 959.269× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads21,693,641
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.65%
PassedEstimated genome contamination3.87%
PassedAverage depth of coverage959.269×
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