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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 21, 2020 |
| Length | 5,745,428 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (All Circularized) |
| N50 | 5,341,889 nt |
| %GC | 37.83% |
| Organism Summary | |
|---|---|
| Name | ATCC® 14581™ |
| Strain Name | [BCRC 10608, CCM 2007, CCUG 1817, CIP 66.20, DSM 32, HAMBI 2018, IAM 13418, JCM 2506, KCTC 3007, LMG 7127, NBRC 15308, NCCB 75016, NCIMB 9376, NCTC 10342, NRIC 1710, NRRL B-14308, VKM B-512] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5830 |
| Number of Hypothetical Proteins | 855 |
| Number of tRNA | 124 |
| Number of 5s rRNA | 15 |
| Number of 16s rRNA | 13 |
| Number of 23s rRNA | 13 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 689,884 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 4,191,169 |
| Illumina Mean Coverage Depth | 145.89× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,191,169
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.43%
PassedEstimated genome contamination0.69%
PassedAverage depth of coverage145.89×
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