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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 39184™ |
| Strain Alias | SL1438 |
| Genotype | Aro- |
| Isolation | Derived from existing strain, S4454 |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 28, 2020 |
| Length | 4,917,178 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 4,842,616 nt |
| %GC | 52.13% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4723 |
| Number of Hypothetical Proteins | 247 |
| Number of tRNA | 81 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 406,306 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 16,298,226 |
| Illumina Mean Coverage Depth | 445.007× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 16,298,226 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.71% |
| Estimated genome contamination | 0.07% |
| Illumina depth of coverage | 445.007× |
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