ATCC® BAA-2173™ | Geobacter sp.

Overview

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Quality Control

Assembly Summary
Date Published	April 10, 2024
Length	3,638,535 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
Assembly Level	Complete
N50	3,638,535 nt
%GC	56.5%

Organism Summary
Name	ATCC® BAA-2173™
Isolation	Groundwater from DOE Y-12 Security Complex
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of CDS	3,303
Number of Hypothetical Proteins	519
Number of tRNA	50
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	23,591
Oxford Nanopore Median Q Score	24
Illumina Read Count	9,922,868
Illumina Mean Coverage Depth	402.088×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,922,868

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.35%

PassedEstimated genome contamination0%

PassedAverage depth of coverage402.088×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Geobacter sp. (ATCC® BAA-2173™)