Organism Summary | |
---|---|
Catalog Number | ATCC® 49186™ |
Strain Alias | NCTC 12112 |
Isolation | Skin ulcer |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | November 26, 2024 |
Length | 3,538,323 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 8 (0 Circularized) |
N50 | 2,234,901 nt |
%GC | 30.55% |
Annotations Summary | |
---|---|
Number of CDS | 3228 |
Number of Hypothetical Proteins | 499 |
Number of tRNA | 57 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 605,855 |
Oxford Nanopore Median Q Score | 20 |
Illumina Read Count | 4,479,126 |
Illumina Mean Coverage Depth | 187.34× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 4,479,126 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 100% |
Estimated genome contamination | 2.25% |
Average depth of coverage | 187.34× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions