Organism Summary | |
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Catalog Number | ATCC® 43037™ |
Strain Alias | FDC 338 [CCUG 21028A, CCUG 33064, CCUG 33226, CIP 105219, JCM 10827] |
Isolation | Periodontal pocket |
Tags | Type Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | June 14, 2019 |
Length | 3,290,811 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 3,290,811 nt |
%GC | 47.08% |
Annotations Summary | |
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Number of CDS | 2654 |
Number of Hypothetical Proteins | 388 |
Number of tRNA | 46 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 59,702 |
Oxford Nanopore Median Q Score | 16 |
Illumina Read Count | 3,771,319 |
Illumina Mean Coverage Depth | 267.783× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,771,319 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 98.91% |
Estimated genome contamination | 0.38% |
Average depth of coverage | 267.783× |