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- Clavibacter michiganensis
- Clavibacter michiganensis subsp. insidiosus
Clavibacter michiganensis subsp. insidiosus (ATCC® 33114™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 21, 2022 |
| Length | 3,376,202 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 6 (3 Circularized) |
| Assembly Level | Chromosome |
| N50 | 1,779,476 nt |
| %GC | 72.65% |
| Organism Summary | |
|---|---|
| Name | ATCC® 33114™ |
| Isolation | Lucerne stem |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,235 |
| Number of Hypothetical Proteins | 586 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 121,381 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 8,273,707 |
| Illumina Mean Coverage Depth | 314.625× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,273,707
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.49%
PassedEstimated genome contamination1.11%
PassedAverage depth of coverage314.625×
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