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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Name | ATCC® 824™ |
| Strain Name | [CCRC 10639, CCUG 42182, DSM 792, IAM 19013, IFO 13948, JCM 1419, KCTC 1790, L.S. McClung 2291, LMG 5710, McCoy and McClung strain W, NCCB 29024, NCCB 84048, NCIMB 8052, VKM B-1787] |
| Isolation | Plant-derived foodstuff - cornmeal |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 4,107,101 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (1 Circularized) |
| N50 | 3,647,681 nt |
| %GC | 30.82% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3881 |
| Number of Hypothetical Proteins | 550 |
| Number of tRNA | 78 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 322,442 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 3,985,019 |
| Illumina Mean Coverage Depth | 238.817× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads3,985,019
Median Q score, all bases38
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness100%
Estimated genome contamination0%
Average depth of coverage238.817×
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