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  • Streptococcus equi
  • Streptococcus equi subsp. zooepidemicus

Streptococcus equi subsp. zooepidemicus (ATCC® 43079™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length2,097,936 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (1 Circularized)
Assembly LevelChromosome
N502,094,923 nt
%GC41.73%
Organism Summary
NameATCC® 43079™
IsolationBovine mastitis
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS1,921
Number of Hypothetical Proteins791
Number of tRNA51
Number of 5s rRNA5
Number of 16s rRNA5
Number of 23s rRNA5
Input Reads Summary
Oxford Nanopore Read Count50,855
Oxford Nanopore Median Q Score24
Illumina Read Count3,370,277
Illumina Mean Coverage Depth326.632×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,370,277
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage326.632×
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