ATCC® BAA-2329™ | Methanosarcina barkeri

Overview

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Quality Control

Assembly Summary
Date Published	June 11, 2025
Length	4,933,516 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (2 Circularized)
N50	4,884,584 nt
%GC	39.22%

Annotations Summary
Number of CDS	4102
Number of Hypothetical Proteins	899
Number of tRNA	61
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	33,707
Oxford Nanopore Median Q Score	41
Illumina Read Count	5,719,648
Illumina Mean Coverage Depth	299.841×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	5,719,648
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.61%
Estimated genome contamination	0.5%
Illumina depth of coverage	299.841×
ONT depth of coverage	100.74×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions