ATCC® 27375™ | Laceyella sacchari

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	3,585,826 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
Assembly Level	None
N50	2,855,020 nt
%GC	49.03%

Organism Summary
Name	ATCC® 27375™
Isolation	Sugarcane bagasse
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Annotations Summary
Number of CDS	3,470
Number of Hypothetical Proteins	553
Number of tRNA	80
Number of 5s rRNA	7
Number of 16s rRNA	9
Number of 23s rRNA	8

Input Reads Summary
Oxford Nanopore Read Count	157,303
Oxford Nanopore Median Q Score	34
Illumina Read Count	7,709,716
Illumina Mean Coverage Depth	318.423×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads7,709,716

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.03%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.85%

PassedEstimated genome contamination0.45%

PassedAverage depth of coverage318.423×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Laceyella sacchari (ATCC® 27375™)