| Organism Summary | |
|---|---|
| Catalog Number | ATCC® MYA-4448™ | 
| Strain Alias | CBS 8839 (IFO 1815; NCYC 2888) | 
| Isolation | Soil | 
| Tags | Type Strain | 
| Biosafety Level | 1 | 
| Type Strain | Yes | 
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 | 
| Length | 12,224,590 nt | 
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly | 
| Number of Contigs | 18 (0 Circularized) | 
| N50 | 953,261 nt | 
| %GC | 37.78% | 
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 729 | 
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 368,951 | 
| Oxford Nanopore Median Q Score | 25 | 
| Illumina Read Count | 9,455,452 | 
| Illumina Mean Coverage Depth | 172.172× | 
| Illumina Median Q Score | 38 | 
| Contig | Start | End | Protein Product | Type | OrthoDB Group | 
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download | 
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 9,455,452 | 
| Median Q score, all bases | 38 | 
| Percent of median Q scores per cycle greater than 25 | 1% | 
| Ambiguous content (% N bases) | 0% | 
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 88.26% | 
| Average depth of coverage | 172.172× |