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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 4,689,072 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (1 Circularized) |
| N50 | 4,680,760 nt |
| %GC | 50.76% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-2730™ |
| Strain Name | J53 Az:R pMG306 |
| Genotype | pMG306 plasmid containing the qnrS1 gene |
| Isolation | Lab engineered |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4473 |
| Number of Hypothetical Proteins | 99 |
| Number of tRNA | 83 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 81,321 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 9,089,245 |
| Illumina Mean Coverage Depth | 223.67× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads9,089,245
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0.04%
PassedAverage depth of coverage223.67×
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