ATCC® 49647™ | Fervidobacterium islandicum

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 49647™
Strain Alias	H21 [DSM 5733]
Isolation	Solfatara field
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	June 10, 2025
Length	2,303,617 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	17 (0 Circularized)
N50	969,657 nt
%GC	40.85%

Annotations Summary
Number of CDS	2116
Number of Hypothetical Proteins	283
Number of tRNA	51
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	208,875
Oxford Nanopore Median Q Score	34
Illumina Read Count	10,212,892
Illumina Mean Coverage Depth	650.882×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	10,212,892
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	98.83%
Estimated genome contamination	6.71%
Illumina depth of coverage	650.882×
ONT depth of coverage	310.898×

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions