ATCC® MYA-4998™ | Cryptococcus gattii

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	December 13, 2024
Length	18,103,763 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	22
Assembly Level	Scaffold
N50	1,080,561 nt
%GC	47.82%

Organism Summary
Name	ATCC® MYA-4998™
Genotype	VGV
Isolation	Tree hole
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of BUSCO Annotations	729

Input Reads Summary
Oxford Nanopore Read Count	526,045
Oxford Nanopore Median Q Score	33
Illumina Read Count	47,710,312
Illumina Mean Coverage Depth	385.911×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads47,710,312

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness96.2%

PassedAverage depth of coverage385.911×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Cryptococcus gattii (ATCC® MYA-4998™)