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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 11799™ |
| Strain Alias | [5382c, CBS 1895, DBVPG 6012, MUCL 30418, NCYC 393, NRRL YB-4231, VKM Y-2253] |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | November 26, 2024 |
| Length | 46,381,342 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 209 (0 Circularized) |
| N50 | 418,137 nt |
| %GC | 55.5% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 734 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 63,210 |
| Oxford Nanopore Median Q Score | 33 |
| Illumina Read Count | 35,477,340 |
| Illumina Mean Coverage Depth | 110.565× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 35,477,340 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 96.9% |
| Average depth of coverage | 110.565× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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