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  • Pectobacterium
  • Pectobacterium carotovorum

Pectobacterium carotovorum (ATCC® 15713™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedNovember 30, 2021
Length4,797,223 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (All Circularized)
Assembly SummaryComplete
N504,732,841 nt
%GC51.91%
Organism Summary
NameATCC® 15713™
IsolationPotato
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,252
Number of Hypothetical Proteins1,348
Number of tRNA78
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count126,478
Oxford Nanopore Median Q Score24
Illumina Read Count4,373,804
Illumina Mean Coverage Depth156.487×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,373,804
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.97%
PassedEstimated genome contamination0.22%
PassedAverage depth of coverage156.487×
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