Organism Summary | |
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Catalog Number | ATCC® 15713™ |
Strain Alias | NCPPB 312 [904, BS 1008, ICMP 5702, LMG 2404] |
Isolation | Potato |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | November 30, 2021 |
Length | 4,797,223 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (All Circularized) |
N50 | 4,732,841 nt |
%GC | 51.91% |
Annotations Summary | |
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Number of CDS | 4218 |
Number of Hypothetical Proteins | 274 |
Number of tRNA | 77 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 126,478 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 4,373,804 |
Illumina Mean Coverage Depth | 156.487× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 4,373,804 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.97% |
Estimated genome contamination | 0.22% |
Average depth of coverage | 156.487× |