Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 3,220,717 bp |
| Sequencing Technology | Illumina + Oxford Nanopore |
| Number of Contigs | 9 (5 Circularized) |
| N50 | 3,142,696 bp |
| %GC | 57.98% |
| Organism Summary | |
|---|---|
| Name | ATCC® 12879™ |
| Isolation | Top fermentation storage beer |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,959 |
| Number of Hypothetical Proteins | 1,302 |
| Number of tRNA | 55 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 157,777 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 4,040,460 |
| Illumina Mean Coverage Depth | 248.354× |
| Illumina Median Q Score | 38 |
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Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,040,460
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.25%
PassedAverage depth of coverage248.354×
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