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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 12879™ |
| Isolation | Top fermentation storage beer |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 3,218,446 nt |
| Sequencing Technology | Illumina + Oxford Nanopore |
| Number of Contigs | 9 (5 Circularized) |
| N50 | 3,142,696 nt |
| %GC | 57.98% |
Annotations Summary | |
|---|---|
| Number of CDS | 2901 |
| Number of Hypothetical Proteins | 386 |
| Number of tRNA | 54 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 157,777 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 4,040,460 |
| Illumina Mean Coverage Depth | 248.473× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 4,040,460 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 80.81% |
| Estimated genome contamination | 11.82% |
| Illumina depth of coverage | 248.473× |
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