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  • Acetobacter pasteurianus
  • Acetobacter pasteurianus subsp. pasteurianus

Acetobacter pasteurianus subsp. pasteurianus (ATCC® 12879™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedSeptember 29, 2020
Length3,220,717 nt
Sequencing TechnologyIllumina + Oxford Nanopore
Number of Contigs9 (5 Circularized)
Assembly SummaryChromosome
N503,142,696 nt
%GC57.98%
Organism Summary
NameATCC® 12879™
IsolationTop fermentation storage beerN
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,959
Number of Hypothetical Proteins1,302
Number of tRNA55
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count157,777
Oxford Nanopore Median Q Score24
Illumina Read Count4,040,460
Illumina Mean Coverage Depth248.354×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,040,460
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.25%
PassedAverage depth of coverage248.354×
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