ATCC® TSD-411™ | Burkholderia oryzae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 30, 2024
Length	7,373,571 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
N50	6,993,120 nt
%GC	66.83%

Organism Summary
Name	ATCC® TSD-411™
Isolation	Oryzo sotivo sediment
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	6699
Number of Hypothetical Proteins	751
Number of tRNA	66
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	18,075
Oxford Nanopore Median Q Score	33
Illumina Read Count	11,354,710
Illumina Mean Coverage Depth	227.028×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads11,354,710

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination1.31%

PassedAverage depth of coverage227.028×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Burkholderia oryzae (ATCC® TSD-411™)