Assembly Summary | |
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Date Published | October 30, 2024 |
Length | 7,373,571 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (1 Circularized) |
N50 | 6,993,120 nt |
%GC | 66.83% |
Organism Summary | |
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Name | ATCC® TSD-411™ |
Isolation | Oryzo sotivo sediment |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain |
Annotations Summary | |
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Number of CDS | 6699 |
Number of Hypothetical Proteins | 751 |
Number of tRNA | 66 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 18,075 |
Oxford Nanopore Median Q Score | 33 |
Illumina Read Count | 11,354,710 |
Illumina Mean Coverage Depth | 227.028× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions