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  • Bifidobacterium
  • Bifidobacterium bifidum

Bifidobacterium bifidum (ATCC® 15696™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedDecember 21, 2020
Length2,339,983 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N502,339,983 nt
%GC62.59%
Organism Summary
NameATCC® 15696™
IsolationIntestine
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS1,922
Number of Hypothetical Proteins974
Number of tRNA53
Number of 5s rRNA0
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count75,297
Oxford Nanopore Median Q Score25
Illumina Read Count4,705,470
Illumina Mean Coverage Depth344.259×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,705,470
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.54%
PassedEstimated genome contamination0%
PassedAverage depth of coverage344.259×
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