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- unclassified Vibrio
- Vibrio sp.
Vibrio sp. (ATCC® TSD-208™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 8, 2023 |
| Length | 3,172,685 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| Assembly Level | Scaffold |
| N50 | 2,488,733 nt |
| %GC | 38.9% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-208™ |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,715 |
| Number of Hypothetical Proteins | 177 |
| Number of tRNA | 95 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 81,736 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 7,552,364 |
| Illumina Mean Coverage Depth | 283.101× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads7,552,364
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness91.88%
PassedEstimated genome contamination0.74%
PassedAverage depth of coverage283.101×
Notes
This item has been published as Beta despite not meeting CheckM completeness criteria. The low completeness percentage has been attributed to a lack of robustness in the CheckM database for this organism
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