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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 201110™ |
| Strain Alias | TIMM 1318 [Kobayashi-1] |
| Isolation | Bird droppings |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | July 1, 2022 |
| Length | 25,141,671 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 26 (0 Circularized) |
| N50 | 3,280,573 nt |
| %GC | 59.44% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 738 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 221,434 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 87,270,667 |
| Illumina Mean Coverage Depth | 412.903× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 87,270,667 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 91.16% |
| Average depth of coverage | 412.903× |
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