ATCC® 1011™ | Aspergillus oryzae

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	April 29, 2024
Length	38,255,495 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	27 (0 Circularized)
N50	3,082,761 nt
%GC	47.43%

Organism Summary
Name	ATCC® 1011™
Strain Name	113 [ATCC 12891, ATCC 4814, ATCC 7561, ATCC 9102, CBS 102.07, CBS 110.47, CBS 100925, IFO 4075, IFO 5375, IMI 16266, IMI 44242, L.A. Underkofler 22, LSHB Ac19, NCTC 598, NRRL 447, NRRL 692, QM 6735, WB 447]
Isolation	Tane-koji
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of BUSCO Annotations	747

Input Reads Summary
Oxford Nanopore Read Count	321,565
Oxford Nanopore Median Q Score	30
Illumina Read Count	177,272,730
Illumina Mean Coverage Depth	679.925×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads177,272,730

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness98.6%

PassedAverage depth of coverage679.925×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Aspergillus oryzae (ATCC® 1011™)