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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 1011™ |
| Strain Alias | 113 [ATCC 12891, ATCC 4814, ATCC 7561, ATCC 9102, CBS 102.07, CBS 110.47, CBS 100925, IFO 4075, IFO 5375, IMI 16266, IMI 44242, L.A. Underkofler 22, LSHB Ac19, NCTC 598, NRRL 447, NRRL 692, QM 6735, WB 447] |
| Isolation | Tane-koji |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 29, 2024 |
| Length | 38,255,495 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 27 (0 Circularized) |
| N50 | 3,082,761 nt |
| %GC | 47.43% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 747 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 321,565 |
| Oxford Nanopore Median Q Score | 30 |
| Illumina Read Count | 177,272,730 |
| Illumina Mean Coverage Depth | 679.925× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 177,272,730 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.6% |
| Average depth of coverage | 679.925× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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