Organism Summary | |
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Catalog Number | ATCC® 208277™ |
Strain Alias | BJ2168 |
Genotype | MATa prc1-407 prb1-1122 pep4-3 leu2 trp1 ura3-52 gal2 |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | April 28, 2023 |
Length | 12,271,866 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 21 (0 Circularized) |
N50 | 992,927 nt |
%GC | 38.07% |
Annotations Summary | |
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Number of BUSCO Annotations | 734 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 670,932 |
Oxford Nanopore Median Q Score | 26 |
Illumina Read Count | 44,510,394 |
Illumina Mean Coverage Depth | 511.706× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 44,510,394 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 96.8% |
Average depth of coverage | 511.706× |
This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions