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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 |
| Length | 3,151,563 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| N50 | 3,082,250 nt |
| %GC | 47.94% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-423™ |
| Tags | |
| Annotations Summary | |
|---|---|
| Number of CDS | 3146 |
| Number of Hypothetical Proteins | 360 |
| Number of tRNA | 63 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 277,767 |
| Oxford Nanopore Median Q Score | 41 |
| Illumina Read Count | 13,346,676 |
| Illumina Mean Coverage Depth | 594.788× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads13,346,676
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness91.8%
PassedEstimated genome contamination0.77%
PassedAverage depth of coverage594.788×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM completeness metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.
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