Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 2,317,905 bp |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 2,317,905 bp |
| %GC | 41.24% |
| Organism Summary | |
|---|---|
| Name | ATCC® 27088™ |
| Isolation | Lung of swine, Argentina |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Antigenic Properties | Serotype 1 |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,167 |
| Number of Hypothetical Proteins | 618 |
| Number of tRNA | 61 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 36,976 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,309,646 |
| Illumina Mean Coverage Depth | 361.748× |
| Illumina Median Q Score | 38 |
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Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,309,646
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.89%
PassedEstimated genome contamination0%
PassedAverage depth of coverage361.748×
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