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  • Actinobacillus
  • Actinobacillus pleuropneumoniae

Actinobacillus pleuropneumoniae (ATCC® 27088™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMarch 27, 2020
Length2,317,905 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N502,317,905 nt
%GC41.24%
Organism Summary
NameATCC® 27088™
IsolationLung of swine
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS2,167
Number of Hypothetical Proteins618
Number of tRNA61
Number of 5s rRNA7
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count36,976
Oxford Nanopore Median Q Score16
Illumina Read Count4,309,646
Illumina Mean Coverage Depth361.748×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,309,646
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99.89%
PassedEstimated genome contamination0%
PassedAverage depth of coverage361.748×
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