Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 14, 2019 |
| Length | 4,747,260 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,747,260 nt |
| %GC | 50.87% |
| Organism Summary | |
|---|---|
| Name | ATCC® 8739™ |
| Genotype | This strain has been sequenced at ATCC and does not contain the stx1 or stx2 genes for Shiga toxin production. |
| Isolation | Feces |
| Biosafety Level | 1 |
| Type Strain | No |
| Antigenic Properties | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,380 |
| Number of Hypothetical Proteins | 884 |
| Number of tRNA | 88 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 66,317 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,254,936 |
| Illumina Mean Coverage Depth | 194.241× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,254,936
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.96%
PassedEstimated genome contamination0.08%
PassedAverage depth of coverage194.241×
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