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  • Escherichia coli

Escherichia coli (ATCC® 8739™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedJune 14, 2019
Length4,747,260 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N504,747,260 nt
%GC50.87%
Organism Summary
NameATCC® 8739™
GenotypeThis strain has been sequenced at ATCC and does not contain the stx1 or stx2 genes for Shiga toxin production.
IsolationFeces
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS4,380
Number of Hypothetical Proteins884
Number of tRNA88
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count66,317
Oxford Nanopore Median Q Score16
Illumina Read Count4,254,936
Illumina Mean Coverage Depth194.241×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,254,936
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.96%
PassedEstimated genome contamination0.08%
PassedAverage depth of coverage194.241×
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