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  • Acinetobacter calcoaceticus/baumannii complex
  • Acinetobacter pittii

Acinetobacter pittii (ATCC® 19004™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedNovember 30, 2021
Length3,983,048 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs7 (3 Circularized)
Assembly SummaryChromosome
N503,646,064 nt
%GC38.82%
Organism Summary
NameATCC® 19004™
IsolationCerebrospinal fluid
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS3,681
Number of Hypothetical Proteins1,581
Number of tRNA75
Number of 5s rRNA6
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count150,439
Oxford Nanopore Median Q Score25
Illumina Read Count22,264,300
Illumina Mean Coverage Depth756.951×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads22,264,300
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.55%
PassedAverage depth of coverage756.951×
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