ATCC® 43880™ | Helicobacter bilis

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	2,534,289 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	718,411 nt
%GC	34.8%

Annotations Summary
Number of CDS	2391
Number of Hypothetical Proteins	794
Number of tRNA	38
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	216,794
Oxford Nanopore Median Q Score	26
Illumina Read Count	4,812,852
Illumina Mean Coverage Depth	279.373×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	4,812,852
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	97.04%
Estimated genome contamination	0.47%
Illumina depth of coverage	279.373×
ONT depth of coverage	396.508×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions