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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® MYA-3666™ |
| Strain Alias | VL6-48 |
| Genotype | MATa, his3-delta200, trpl-delta1, ura3-52, ade2-101, lys2, psi+cir° |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 1, 2022 |
| Length | 12,185,667 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 18 (0 Circularized) |
| N50 | 812,494 nt |
| %GC | 38.15% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 731 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 493,945 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 38,600,199 |
| Illumina Mean Coverage Depth | 372.955× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 38,600,199 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 89.45% |
| Average depth of coverage | 372.955× |
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