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Overview
Genome Browser
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Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 47014™ |
| Strain Alias | JM107 |
| Genotype | F' traD36 proA+ proB+ lacIq delta(lacZ)M15 delta(pro-lac) supE44 hsdR17 mcrA gyrA96 endA1 thi-1 relA1 lambda- |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 4,725,028 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 4,493,480 nt |
| %GC | 50.77% |
Annotations Summary | |
|---|---|
| Number of CDS | 4482 |
| Number of Hypothetical Proteins | 100 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 28,459 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 12,804,813 |
| Illumina Mean Coverage Depth | 361.925× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 12,804,813 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 99.43% |
| Estimated genome contamination | 0.39% |
| Illumina depth of coverage | 361.925× |
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