ATCC® 49956™ | Roseomonas gilardii subsp gilardii

Overview

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Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	4,625,143 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
N50	4,101,951 nt
%GC	70.32%

Annotations Summary
Number of CDS	4146
Number of Hypothetical Proteins	434
Number of tRNA	60
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	18,844
Oxford Nanopore Median Q Score	33
Illumina Read Count	7,563,066
Illumina Mean Coverage Depth	240.164×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	7,563,066
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	92.64%
Estimated genome contamination	3.5%
Illumina depth of coverage	240.164×
ONT depth of coverage	37.75×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions