As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 1,510,757 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 14 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 412,702 nt |
| %GC | 25.75% |
| Organism Summary | |
|---|---|
| Name | ATCC® 27556™ |
| Isolation | Stubborn disease-affected citrus plant (Washington navel orange tree) |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 1,922 |
| Number of Hypothetical Proteins | 1,039 |
| Number of tRNA | 32 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 120,657 |
| Oxford Nanopore Median Q Score | 17 |
| Illumina Read Count | 4,363,765 |
| Illumina Mean Coverage Depth | 588.895× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,363,765
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.12%
PassedEstimated genome contamination0.86%
PassedAverage depth of coverage588.895×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline