ATCC® VR-1310™ | Chlamydia pneumoniae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 11, 2025
Length	1,224,310 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	5 (0 Circularized)
N50	1,021,574 nt
%GC	40.56%

Organism Summary
Name	ATCC® VR-1310™
Isolation	Throat swab of a pneumonia patient.
Tags
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	1049
Number of Hypothetical Proteins	205
Number of tRNA	38
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	300,229
Oxford Nanopore Median Q Score	28
Illumina Read Count	11,419,914
Illumina Mean Coverage Depth	206.889×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads11,419,914

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.04%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.49%

PassedEstimated genome contamination0.3%

PassedAverage depth of coverage206.889×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia pneumoniae (ATCC® VR-1310™)