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Purchased a product from ATCC? Enter in the lot number to download the omics data or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 27761™ |
| Strain Alias | VPI C6-61 [NCTC 11835] |
| Isolation | Feces |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | December 21, 2022 |
| Length | 3,661,508 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 3,661,508 nt |
| %GC | 43.01% |
Annotations Summary | |
|---|---|
| Number of CDS | 3356 |
| Number of Hypothetical Proteins | 434 |
| Number of tRNA | 62 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 228,748 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 13,737,794 |
| Illumina Mean Coverage Depth | 514.671× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 13,737,794 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 82.21% |
| Estimated genome contamination | 19.42% |
| Illumina depth of coverage | 514.671× |
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