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  • Mesomycoplasma hyopneumoniae

Mesomycoplasma hyopneumoniae (ATCC® 25934™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedMay 3, 2022
Length908,326 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (0 Circularized)
Assembly SummaryChromosome
N50901,619 nt
%GC28.5%
Organism Summary
NameATCC® 25934™
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS1,350
Number of Hypothetical Proteins848
Number of tRNA30
Number of 5s rRNA1
Number of 16s rRNA1
Number of 23s rRNA1
Input Reads Summary
Oxford Nanopore Read Count84,171
Oxford Nanopore Median Q Score23
Illumina Read Count3,418,466
Illumina Mean Coverage Depth515.453×
Illumina Median Q Score37
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,418,466
PassedMedian Q score, all bases37
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.28%
PassedEstimated genome contamination2.17%
PassedAverage depth of coverage515.453×
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