Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Level | |
|---|---|
| Date Published | May 3, 2022 |
| Length | 908,326 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Summary | Chromosome |
| N50 | 901,619 nt |
| %GC | 28.5% |
| Organism Summary | |
|---|---|
| Name | ATCC® 25934™ |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 1,350 |
| Number of Hypothetical Proteins | 848 |
| Number of tRNA | 30 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 84,171 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 3,418,466 |
| Illumina Mean Coverage Depth | 515.453× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads3,418,466
PassedMedian Q score, all bases37
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.28%
PassedEstimated genome contamination2.17%
PassedAverage depth of coverage515.453×
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