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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 6462™ |
| Strain Alias | NRS 273 [155, CCUG 26678, CIP 103472, DSM 2048, HAMBI 1827, LMG 7128, NCTC 12974, NRRL B-14799, NRRL B-14811] |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 5,627,528 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (2 Circularized) |
| N50 | 3,092,827 nt |
| %GC | 35.39% |
Annotations Summary | |
|---|---|
| Number of CDS | 5712 |
| Number of Hypothetical Proteins | 589 |
| Number of tRNA | 107 |
| Number of 5s rRNA | 12 |
| Number of 16s rRNA | 12 |
| Number of 23s rRNA | 12 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 52,812 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 3,993,220 |
| Illumina Mean Coverage Depth | 162.695× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 3,993,220 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 99.41% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 162.695× |
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