Organism Summary | |
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Catalog Number | ATCC® 13047™ |
Strain Alias | CDC 442-68 [Cloaca A, IFO 13535, NCDC 279-56 , NCTC 10005] |
Isolation | Spinal fluid |
Tags | MSA ComponentType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | March 27, 2020 |
Length | 5,608,020 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (3 Circularized) |
N50 | 5,317,012 nt |
%GC | 54.58% |
Annotations Summary | |
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Number of CDS | 5408 |
Number of Hypothetical Proteins | 426 |
Number of tRNA | 90 |
Number of 5s rRNA | 9 |
Number of 16s rRNA | 8 |
Number of 23s rRNA | 8 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 37,777 |
Oxford Nanopore Median Q Score | 16 |
Illumina Read Count | 4,170,351 |
Illumina Mean Coverage Depth | 174.892× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 4,170,351 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 0.77% |
Average depth of coverage | 174.892× |