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- Enterobacter cloacae
- Enterobacter cloacae subsp. cloacae
Enterobacter cloacae subsp. cloacae (ATCC® 13047™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 5,608,020 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (3 Circularized) |
| Assembly Level | Chromosome |
| N50 | 5,317,012 nt |
| %GC | 54.58% |
| Organism Summary | |
|---|---|
| Name | ATCC® 13047™ |
| Isolation | Spinal fluid |
| Tags | MSA ComponentType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,402 |
| Number of Hypothetical Proteins | 442 |
| Number of tRNA | 90 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 37,777 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,170,351 |
| Illumina Mean Coverage Depth | 174.892× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,170,351
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.77%
PassedAverage depth of coverage174.892×
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