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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 2, 2021 |
| Length | 4,708,005 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (3 Circularized) |
| Assembly Level | Chromosome |
| N50 | 1,051,893 nt |
| %GC | 68.02% |
| Organism Summary | |
|---|---|
| Name | ATCC® 49419™ |
| Isolation | Pond water |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,576 |
| Number of Hypothetical Proteins | 629 |
| Number of tRNA | 55 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 134,000 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 13,086,528 |
| Illumina Mean Coverage Depth | 382.571× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads13,086,528
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.7%
PassedEstimated genome contamination0.23%
PassedAverage depth of coverage382.571×
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