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- Orthoflavivirus denguei
- Dengue virus type 1
Dengue virus type 1 (ATCC® VR-1856™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 10,708 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 1 |
| Assembly Level | Complete |
| N50 | 10,708 nt |
| %GC | 46.83% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1856™ |
| Isolation | Pooled serum from 6 patients. |
| Biosafety Level | 2 |
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 1,284,203 |
| Illumina Mean Coverage Depth | 3,021.778× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Notes
This virus was manually assembled and curated, due to its automated assembly not meeting our reference-based quality filtering. See our technical documentation for further details: http://docs.onecodex.com/en/articles/3996287-genome-assembly
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