ATCC® 25202™ | Corallococcus coralloides

Overview

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Quality Control

Assembly Summary
Date Published	April 2, 2022
Length	10,078,519 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	10,078,519 nt
%GC	69.9%

Annotations Summary
Number of CDS	8085
Number of Hypothetical Proteins	1844
Number of tRNA	60
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	34,941
Oxford Nanopore Median Q Score	41
Illumina Read Count	7,847,782
Illumina Mean Coverage Depth	208.095×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	7,847,782
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.15%
Estimated genome contamination	0.23%
Illumina depth of coverage	208.095×
ONT depth of coverage	17.001×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions