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- Simian rotavirus A/SA11
- Simian rotavirus
Simian rotavirus (ATCC® VR-1565™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 1, 2024 |
| Length | 19,221 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 13 |
| Assembly Level | Complete |
| N50 | 1,663 nt |
| %GC | 33.58% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1565™ |
| Isolation | Derived from ATCC VR-899 after treatment for mycoplasma contamination with 1,1,2-Trichlorotrifluoroethane and MRA (Mycoplasma Removal Agent). |
| Biosafety Level | 2 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 1,219,454 |
| Illumina Mean Coverage Depth | 947.118× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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