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Overview
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-3449™ |
| Strain Alias | RAV-1 |
| Isolation | Chicken fibrosarcoma |
| Biosafety Level | 2 |
Assembly Summary | |
|---|---|
| Date Published | March 27, 2025 |
| Length | 7,547 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 7,547 nt |
| %GC | 52.67% |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,120,420 |
| Illumina Mean Coverage Depth | 1,234.957× |
| Illumina Median Q Score | 38 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This item has been published as Gold despite not meeting CheckV completeness criteria. CheckV completeness metric has been omitted from publication QC criteria for this item due to its rarity in the CheckV database. This virus was assembled and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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