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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 9080™ |
| Strain Alias | 4228 [ATCC 24904, ATCC 46991, BI CZAS 0323/1, CBS 2354, CCRC 20855, CCY 48-76, DBVPG 6248, DSM 70424, IFO 0565, NCYC 74, NRRL Y-1089, VKM-366, VKPM Y-830, VTT C-66065] |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 12,172,462 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 31 (0 Circularized) |
| N50 | 767,355 nt |
| %GC | 38.16% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 729 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 817,033 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 20,435,783 |
| Illumina Mean Coverage Depth | 349.867× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 20,435,783 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 88.79% |
| Average depth of coverage | 349.867× |
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