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  • Desulfovibrio
  • Cupidesulfovibrio oxamicus

Cupidesulfovibrio oxamicus (ATCC® 33405™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 29, 2021
Length3,961,966 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs27 (0 Circularized)
Assembly LevelChromosome
N50357,779 nt
%GC66.58%
Organism Summary
NameATCC® 33405™
IsolationStream polluted with duck excrement
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,211
Number of Hypothetical Proteins1,625
Number of tRNA59
Number of 5s rRNA2
Number of 16s rRNA3
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count10,071
Oxford Nanopore Median Q Score21
Illumina Read Count5,074,872
Illumina Mean Coverage Depth207.667×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,074,872
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness98.22%
PassedEstimated genome contamination0%
PassedAverage depth of coverage207.667×
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