Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 29, 2021 |
| Length | 3,961,966 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 27 (0 Circularized) |
| Assembly Level | Chromosome |
| N50 | 357,779 nt |
| %GC | 66.58% |
| Organism Summary | |
|---|---|
| Name | ATCC® 33405™ |
| Isolation | Stream polluted with duck excrement |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,211 |
| Number of Hypothetical Proteins | 1,625 |
| Number of tRNA | 59 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 10,071 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 5,074,872 |
| Illumina Mean Coverage Depth | 207.667× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,074,872
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness98.22%
PassedEstimated genome contamination0%
PassedAverage depth of coverage207.667×
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