ATCC® 43581™ | Acidomonas methanolica

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 43581™
Strain Alias	IMET 10945 [MB58, TK 0705]
Isolation	Septic methanol yeast process
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	July 17, 2024
Length	3,815,773 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (0 Circularized)
N50	3,811,890 nt
%GC	64.55%

Annotations Summary
Number of CDS	3639
Number of Hypothetical Proteins	491
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	14,943
Oxford Nanopore Median Q Score	32
Illumina Read Count	10,056,694
Illumina Mean Coverage Depth	389.124×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	10,056,694
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.31%
Estimated genome contamination	1.17%
Illumina depth of coverage	389.124×
ONT depth of coverage	43.906×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions