ATCC® 43773™ | Helicobacter mustelae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 43773™
Strain Alias	R85-13-12F
Isolation	Ferret gastric mucosa, Mustela putorius furo
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	October 3, 2023
Length	1,569,228 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
N50	1,558,360 nt
%GC	42.46%

Annotations Summary
Number of CDS	1402
Number of Hypothetical Proteins	170
Number of tRNA	39
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	75,697
Oxford Nanopore Median Q Score	13.9
Illumina Read Count	13,636,124
Illumina Mean Coverage Depth	1,283.297×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	13,636,124
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.59%
Estimated genome contamination	0.07%
Illumina depth of coverage	1,283.297×
ONT depth of coverage	332.267×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions