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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 3, 2023 |
| Length | 1,569,228 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (1 Circularized) |
| N50 | 1,558,360 nt |
| %GC | 42.46% |
| Organism Summary | |
|---|---|
| Name | ATCC® 43773™ |
| Strain Name | R85-13-12F |
| Isolation | Ferret gastric mucosa, Mustela putorius furo |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 1402 |
| Number of Hypothetical Proteins | 170 |
| Number of tRNA | 39 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 75,697 |
| Oxford Nanopore Median Q Score | 13.9 |
| Illumina Read Count | 13,636,124 |
| Illumina Mean Coverage Depth | 1,283.297× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads13,636,124
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.59%
PassedEstimated genome contamination0.07%
PassedAverage depth of coverage1,283.297×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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